Zotero
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'q': quit, Alt+Enter: newline
> Find all papers under "Agent" collection and recursively under its sub-collections in my zotero lib. Output date
YYYY-MM-DD, collection path and title of the paper
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<think>
The user wants me to access their Zotero library, find all papers under the "Agent" collection (including papers in its
sub-collections), and return a formatted list with date, collection path, and paper title.
Based on the available Python modules, I can see I have access to the `freeact_skills.zotero.api` module, which provides
functionality to interact with Zotero libraries. I should:
1. Load the Zotero group library
2. Sync it to get the latest data
3. Find the "Agent" collection
4. Find all documents under this collection recursively
5. Format the output as requested
</think>
I'll help you find all papers under the "Agent" collection and its sub-collections in your Zotero library. Let me access
your Zotero library and retrieve this information.
╭─ Code action ────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ 1 # Import the Zotero API module│
│ 2 fromfreeact_skills.zotero.apiimportload_group_library│
│ 3 │
│ 4 # Load the Zotero group library│
│ 5 library=load_group_library()│
│ 6 │
│ 7 # Sync to get the latest data│
│ 8 library.sync()│
│ 9 │
│10 # Get the root collection│
│11 root=library.root()│
│12 │
│13 # Find the "Agent" collection│
│14 agent_collections=root.filter(lambdanode:hasattr(node,'name')andnode.name=="Agent")│
│15 │
│16 ifagent_collections:│
│17 agent_collection=agent_collections[0]│
│18 print(f"Found 'Agent' collection with key: {agent_collection.key}")│
│19 │
│20 # Get all documents under this collection recursively│
│21 documents=agent_collection.sub_documents()│
│22 print(f"Found {len(documents)} documents in the 'Agent' collection and its sub-collections")│
│23 │
│24 # Create a list to store document information│
│25 document_info=[]│
│26 │
│27 # For each document, collect its information│
│28 fordocindocuments:│
│29 # Get the date (format as YYYY-MM-DD or None if not available)│
│30 date_str=str(doc.date)ifdoc.dateelse"None"│
│31 │
│32 # Get the collection path│
│33 # Start with the collections that directly contain this document│
│34 collection_paths=[]│
│35 forcollectionindoc.collections:│
│36 # Build the path from this collection up to the root│
│37 path=[collection.name]│
│38 parent=collection.parent│
│39 whileparent!=rootandparent!=parent.parent:# Stop at root│
│40 path.insert(0,parent.name)│
│41 parent=parent.parent│
│42 collection_paths.append(" > ".join(path))│
│43 │
│44 # If document belongs to multiple collections, join them with "; "│
│45 collection_path_str="; ".join(collection_paths)│
│46 │
│47 # Get the title│
│48 title=doc.title│
│49 │
│50 # Add to the document info list│
│51 document_info.append((date_str,collection_path_str,title))│
│52 │
│53 # Sort by date (newest first)│
│54 document_info.sort(reverse=True)│
│55 │
│56 # Print the document information│
│57 print("\nDate | Collection Path | Title")│
│58 print("-"*80)│
│59 fordate,path,titleindocument_info:│
│60 print(f"{date} | {path} | {title}")│
│61 else:│
│62 print("'Agent' collection not found in the Zotero library")│
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
Accumulated token usage: input=4.42k, thinking=128, output=832, cache_write=0, cache_read=4.21k; Accumulated costs:
0.026 USD
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'Agent' collection not found in the Zotero library
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It seems there's no collection specifically named "Agent" in your Zotero library. Let me list all the top-level
collections in your library so you can see what collections are available:
╭─ Code action ────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ 1 # Get the root collection│
│ 2 root=library.root()│
│ 3 │
│ 4 # List all top-level collections│
│ 5 print("Top-level collections in your Zotero library:")│
│ 6 print("-"*40)│
│ 7 forcollectioninroot.collections:│
│ 8 print(f"- {collection.name}")│
│ 9 │
│10 # Optionally, let's check if there's a collection with a similar name to "Agent"│
│11 similar_collections=root.filter(lambdanode:hasattr(node,'name')and"agent"innode.name.lower())│
│12 ifsimilar_collections:│
│13 print("\nCollections with names similar to 'Agent':")│
│14 print("-"*40)│
│15 forcollectioninsimilar_collections:│
│16 print(f"- {collection.name}")│
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
Accumulated token usage: input=9.78k, thinking=128, output=1.10k, cache_write=0, cache_read=8.42k; Accumulated costs:
0.046 USD
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Top-level collections in your Zotero library:
----------------------------------------
- Diffusion
- Reasoning
- Scaling
- Evaluation
- Synthetic
- Robotic
- Retrieval
- Topics
- Agents
- Learning
Collections with names similar to 'Agent':
----------------------------------------
- Agentic
- Agents
- Agent memory
- Desktop agents
- Multi agent systems
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I found that there's an "Agents" collection in your library (instead of "Agent"), as well as several agent-related
collections like "Agentic", "Agent memory", "Desktop agents", and "Multi agent systems".
Let me retrieve the papers from the "Agents" collection, which appears to be the main collection related to agents. I'll
also check if any of the other agent-related collections are subcollections or independent top-level collections:
╭─ Code action ────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ 1 # Find the "Agents" collection│
│ 2 agents_collections=root.filter(lambdanode:hasattr(node,'name')andnode.name=="Agents")│
│ 3 │
│ 4 ifagents_collections:│
│ 5 agents_collection=agents_collections[0]│
│ 6 print(f"Found 'Agents' collection with key: {agents_collection.key}")│
│ 7 │
│ 8 # Get all sub-collections│
│ 9 sub_collections=agents_collection.sub_collections()│
│10 print(f"\nSub-collections under 'Agents':")│
│11 forscinsub_collections:│
│12 ifsc!=agents_collection:# Skip the collection itself│
│13 print(f"- {sc.name}")│
│14 │
│15 # Get all documents under this collection recursively│
│16 documents=agents_collection.sub_documents()│
│17 print(f"\nFound {len(documents)} documents in the 'Agents' collection and its sub-collections")│
│18 │
│19 # Create a list to store document information│
│20 document_info=[]│
│21 │
│22 # For each document, collect its information│
│23 fordocindocuments:│
│24 # Get the date (format as YYYY-MM-DD or None if not available)│
│25 date_str=str(doc.date)ifdoc.dateelse"None"│
│26 │
│27 # Find collection path(s) for this document│
│28 collection_paths=[]│
│29 │
│30 # Check all collections this document directly belongs to│
│31 forcollectionindoc.collections:│
│32 # Build the path from this collection up to the root│
│33 path=[collection.name]│
│34 parent=collection.parent│
│35 whileparent!=rootandparent!=parent.parent:# Stop at root│
│36 path.insert(0,parent.name)│
│37 parent=parent.parent│
│38 collection_paths.append(" > ".join(path))│
│39 │
│40 # If document belongs to multiple collections, join them with "; "│
│41 collection_path_str="; ".join(collection_paths)│
│42 │
│43 # Get the title│
│44 title=doc.title│
│45 │
│46 # Add to the document info list│
│47 document_info.append((date_str,collection_path_str,title))│
│48 │
│49 # Sort by date (newest first)│
│50 document_info.sort(reverse=True)│
│51 │
│52 # Print the document information in a table format│
│53 print("\nDate | Collection Path | Title")│
│54 print("-"*100)│
│55 fordate,path,titleindocument_info:│
│56 print(f"{date} | {path} | {title}")│
│57 else:│
│58 print("'Agents' collection not found in the Zotero library")│
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
Accumulated token usage: input=15.60k, thinking=128, output=1.86k, cache_write=0, cache_read=12.63k; Accumulated costs:
0.075 USD
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Found 'Agents' collection with key: R4U47FMT
Sub-collections under 'Agents':
- Evaluation
- Agent memory
- Evolutionary approaches
- Scientific research
- Design patterns
- Declarative pipelines
- Desktop agents
- Multi agent systems
- Process supervision
- Tree search
- Software engineering
- Code actions
Found 45 documents in the 'Agents' collection and its sub-collections
Date | Collection Path | Title
----------------------------------------------------------------------------------------------------
None | Agents > Software engineering | Raising the bar on SWE-bench Verified with Claude 3.5 Sonnet \ Anthropic
2025-03-31 | Agents | Advances and Challenges in Foundation Agents: From Brain-Inspired Intelligence to Evolutionary,
Collaborative, and Safe Systems
2025-03-20 | Agents > Evaluation | Survey on Evaluation of LLM-based Agents
2025-02-26 | Agents > Scientific research | Towards an AI co-scientist
2025-02-21 | Agents > Multi agent systems | Multi-Agent Coordination across Diverse Applications: A Survey
2025-02-19 | Agents > Software engineering | SWE-Lancer: Can Frontier LLMs Earn $1 Million from Real-World Freelance
Software Engineering?
2025-02-10 | Agents > Agent memory | Position: Episodic Memory is the Missing Piece for Long-Term LLM Agents
2025-02-08 | Agents > Desktop agents | ACU - Awesome Agents for Computer Use
2025-02-07 | Agents > Scientific research | Transforming Science with Large Language Models: A Survey on AI-assisted
Scientific Discovery, Experimentation, Content Generation, and Evaluation
2025-01-27 | Agents > Desktop agents | AI Agents for Computer Use: A Review of Instruction-based Computer Control, GUI
Automation, and Operator Assistants
2025-01-13 | Agents > Code actions | PoAct: Policy and Action Dual-Control Agent for Generalized Applications
2024-11-27 | Agents > Evolutionary approaches | Agent Skill Acquisition for Large Language Models via CycleQD
2024-11-27 | Agents > Desktop agents | Large Language Model-Brained GUI Agents: A Survey
2024-11-26 | Agents > Desktop agents | ShowUI: One Vision-Language-Action Model for GUI Visual Agent
2024-11-17 | Agents > Scientific research | AIGS: Generating Science from AI-Powered Automated Falsification
2024-11-15 | Agents > Software engineering | An Empirical Study on LLM-based Agents for Automated Bug Fixing
2024-11-15 | Agents > Desktop agents | The Dawn of GUI Agent: A Preliminary Case Study with Claude 3.5 Computer Use
2024-11-10 | Agents; Reasoning > Repos | open-thought/system-2-research
2024-11-08 | Agents | A Taxonomy of AgentOps for Enabling Observability of Foundation Model based Agents
2024-11-07 | Agents > Multi agent systems | Magentic-One: A Generalist Multi-Agent System for Solving Complex Tasks
2024-11-04 | Agents > Code actions | DynaSaur: Large Language Agents Beyond Predefined Actions
2024-10-28 | Agents > Scientific research | OpenResearcher: Unleashing AI for Accelerated Scientific Research
2024-10-16 | Agents > Declarative pipelines | DocETL: Agentic Query Rewriting and Evaluation for Complex Document
Processing
2024-10-14 | Agents > Code actions | AFlow: Automating Agentic Workflow Generation
2024-10-10 | Agents > Multi agent systems | Optima: Optimizing Effectiveness and Efficiency for LLM-Based Multi-Agent
System
2024-10-10 | Agents > Desktop agents | Agent S: An Open Agentic Framework that Uses Computers Like a Human
2024-10-04 | Agents > Code actions; Agents > Software engineering | OpenHands: An Open Platform for AI Software
Developers as Generalist Agents
2024-10-04 | Agents > Code actions | Steering Large Language Models between Code Execution and Textual Reasoning
2024-09-26 | Agents > Software engineering | Don't Sleep on Single-agent Systems
2024-09-11 | Agents > Agent memory | Agent Workflow Memory
2024-09-04 | Agents > Software engineering | Large Language Model-Based Agents for Software Engineering: A Survey
2024-09-01 | Agents > Scientific research | The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery
2024-08-14 | Agents > Software engineering | LLMs are bad at returning code in JSON
2024-08-13 | Agents > Tree search; Agents > Process supervision; Reasoning > Process supervision | Agent Q: Advanced
Reasoning and Learning for Autonomous AI Agents
2024-07-01 | Agents > Tree search | Tree Search for Language Model Agents
2024-06-20 | Agents > Code actions | TaskWeaver: A Code-First Agent Framework
2024-06-07 | Agents > Code actions | Executable Code Actions Elicit Better LLM Agents
2024-06-05 | Agents > Tree search | Language Agent Tree Search Unifies Reasoning Acting and Planning in Language Models
2024-05-30 | Agents > Software engineering | SWE-agent: Agent-Computer Interfaces Enable Automated Software Engineering
2024-03-15 | Agents | Cognitive Architectures for Language Agents
2024-03-10 | Agents > Code actions | Large Language Models as Tool Makers
2024-02-28 | Agents > Code actions | OpenCodeInterpreter: Integrating Code Generation with Execution and Refinement
2024-01-22 | Agents > Design patterns | MicroAgents: Exploring Agentic Architecture with Microservices
2023-10-23 | Agents > Tree search | Reasoning with Language Model is Planning with World Model
2023-10-05 | Agents > Declarative pipelines | DSPy: Compiling Declarative Language Model Calls into Self-Improving
Pipelines
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Here are all the papers under the "Agents" collection and its sub-collections from your Zotero library. The results are
presented in the format you requested (date, collection path, and title), sorted by date with the newest papers first.
I found 45 documents in total within the "Agents" collection hierarchy. The collection path shows where each document is
located - for example, "Agents > Software engineering" indicates a paper in the "Software engineering" sub-collection of
the main "Agents" collection.
The "Agents" collection has several sub-collections including:
- Agent memory
- Code actions
- Declarative pipelines
- Desktop agents
- Design patterns
- Evaluation
- Evolutionary approaches
- Multi agent systems
- Process supervision
- Scientific research
- Software engineering
- Tree search
Some notable recent papers include:
- "Advances and Challenges in Foundation Agents: From Brain-Inspired Intelligence to Evolutionary, Collaborative, and
Safe Systems" (March 31, 2025)
- "Survey on Evaluation of LLM-based Agents" (March 20, 2025)
- "Towards an AI co-scientist" (February, 2025)
Note that some entries have "None" as the date, which means the publication date wasn't available in the Zotero
metadata.
Is there any specific sub-collection or time period you'd like to focus on, or would you like me to provide more
information about any of these papers?
Accumulated token usage: input=23.78k, thinking=128, output=2.19k, cache_write=0, cache_read=16.84k; Accumulated costs:
0.104 USD
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'q': quit, Alt+Enter: newline
> q